STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_1925Collagen triple helix repeat. (492 aa)    
Predicted Functional Partners:
Sden_1924
Collagen triple helix repeat.
 
    
0.825
Sden_1926
Collagen triple helix repeat.
 
    
0.820
Sden_3093
Peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
 
 0.754
Sden_1409
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
   
 
 0.704
Sden_3045
Peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
   
 
 0.704
Sden_1743
DNA translocase FtsK.
    
 
 0.661
Sden_1595
Conserved hypothetical protein.
  
     0.608
Sden_1485
AAA ATPase containing von Willebrand factor type A (vWA) domain-like protein.
    
 
 0.582
Sden_1927
Tetratricopeptide TPR_2.
  
    0.570
Sden_3532
Amino acid adenylation.
 
 
 0.565
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.