Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sden_1963Chemotaxis sensory transducer. (535 aa)    
Predicted Functional Partners:
Sden_1346
ATP-binding region, ATPase-like protein.
 
 0.985
Sden_3296
CheW-like protein.
 
 0.985
Sden_1351
CheW protein.
 
 0.978
Sden_3298
CheW-like protein.
 
 0.977
Sden_2144
Response regulator receiver modulated CheW protein.
 
 0.972
Sden_1301
Response regulator receiver modulated CheW protein.
 
 0.967
Sden_2527
Response regulator receiver modulated CheW protein.
 
 0.967
cheD
Chemotaxis protein, stimulates methylation of MCP protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
  0.959
Sden_1302
MCP methyltransferase, CheR-type.
 
 0.936
cheB1
Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.936
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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