Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sden_1978ATPase associated with various cellular activities, AAA_5. (285 aa)    
Predicted Functional Partners:
Sden_1979
Von Willebrand factor, type A.
 
 
 0.996
Sden_1981
Nitric-oxide reductase.
 
    0.973
Sden_1980
Cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.972
Sden_1977
Cytochrome c oxidase, subunit III.
 
  
 0.888
nosZ
Twin-arginine translocation pathway signal; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
  
  
 0.846
Sden_2220
FMN-binding.
  
  
 0.826
Sden_2218
Periplasmic copper-binding.
  
    0.820
Sden_2215
NosL.
 
  
 0.753
Sden_1976
Hypothetical protein.
       0.701
Sden_2216
Conserved hypothetical nitrous oxide metabolic protein.
 
  
 0.641
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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