STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_1987Alpha/beta hydrolase fold. (253 aa)    
Predicted Functional Partners:
Sden_3532
Amino acid adenylation.
  
 
 0.829
Sden_3733
Amino acid adenylation.
   
 
 0.756
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
   0.734
Sden_2890
Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.709
Sden_1177
Amino acid adenylation.
   
 
 0.664
Sden_1761
acyl-CoA dehydrogenase-like protein.
   
   0.586
Sden_1764
acyl-CoA dehydrogenase-like protein.
   
   0.586
Sden_1941
Butyryl-CoA dehydrogenase.
   
   0.586
Sden_2115
acyl-CoA dehydrogenase-like protein.
   
   0.586
Sden_2245
isovaleryl-CoA dehydrogenase.
   
   0.586
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.