Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Sden_2004Glucan 1,4-alpha-glucosidase. (841 aa)    
Predicted Functional Partners:
Sden_2002
Alpha-glucosidase.
 
  
 0.978
Sden_2028
Alpha amylase, catalytic region.
 
  
 0.928
Sden_1800
Alpha amylase, catalytic region.
    
 0.914
Sden_2003
Major facilitator superfamily MFS_1.
 
  
 0.745
Sden_2707
Tryptophan halogenase.
 
     0.678
Sden_2708
TonB-dependent receptor.
  
     0.655
Sden_2030
Tryptophan halogenase.
 
     0.578
Sden_2083
Hypothetical protein.
  
     0.539
Sden_2218
Periplasmic copper-binding.
   
    0.522
Sden_0741
Conserved hypothetical protein.
  
     0.508
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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