Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sden_2136Chitinase. Glycosyl Hydrolase family 18. (869 aa)    
Predicted Functional Partners:
Sden_0553
beta-N-acetylhexosaminidase.
  
  
  0.962
Sden_3140
Chitinase.
  
 
  0.958
nagZ
Beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
   
 
  0.900
Sden_3045
Peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
 
 
 
 0.851
Sden_1030
Chitin-binding, domain 3.
  
     0.728
Sden_3093
Peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
  
 
 0.713
Sden_1409
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
 
 
 0.710
Sden_3015
Vibriolysin. Metallo peptidase. MEROPS family M04.
 
 
 
 0.703
Sden_2622
Staphylolysin. Metallo peptidase. MEROPS family M23A.
  
     0.647
Sden_1743
DNA translocase FtsK.
    
   0.639
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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