Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sden_0448 | Sden_2307 | Sden_0448 | Sden_2307 | Thioredoxin; Belongs to the thioredoxin family. | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.784 |
Sden_0448 | Sden_3532 | Sden_0448 | Sden_3532 | Thioredoxin; Belongs to the thioredoxin family. | Amino acid adenylation. | 0.464 |
Sden_1429 | Sden_2307 | Sden_1429 | Sden_2307 | Thioredoxin-related. | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.756 |
Sden_1429 | Sden_3532 | Sden_1429 | Sden_3532 | Thioredoxin-related. | Amino acid adenylation. | 0.464 |
Sden_2307 | Sden_0448 | Sden_2307 | Sden_0448 | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Thioredoxin; Belongs to the thioredoxin family. | 0.784 |
Sden_2307 | Sden_1429 | Sden_2307 | Sden_1429 | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Thioredoxin-related. | 0.756 |
Sden_2307 | Sden_2838 | Sden_2307 | Sden_2838 | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family. | 0.704 |
Sden_2307 | Sden_3532 | Sden_2307 | Sden_3532 | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Amino acid adenylation. | 0.637 |
Sden_2307 | engB | Sden_2307 | Sden_3621 | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Cell division checkpoint GTPase YihA; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.647 |
Sden_2307 | infB | Sden_2307 | Sden_1007 | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.663 |
Sden_2307 | rpsQ | Sden_2307 | Sden_0179 | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.638 |
Sden_2307 | rsmH | Sden_2307 | Sden_0347 | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.663 |
Sden_2307 | truA | Sden_2307 | Sden_1486 | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.669 |
Sden_2307 | ybeY | Sden_2307 | Sden_0813 | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.697 |
Sden_2838 | Sden_2307 | Sden_2838 | Sden_2307 | Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family. | Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.704 |
Sden_2838 | Sden_3532 | Sden_2838 | Sden_3532 | Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family. | Amino acid adenylation. | 0.689 |
Sden_2838 | infB | Sden_2838 | Sden_1007 | Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family. | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.690 |
Sden_2838 | rpsQ | Sden_2838 | Sden_0179 | Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.663 |
Sden_2838 | ybeY | Sden_2838 | Sden_0813 | Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family. | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.690 |
Sden_3532 | Sden_0448 | Sden_3532 | Sden_0448 | Amino acid adenylation. | Thioredoxin; Belongs to the thioredoxin family. | 0.464 |
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