Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sden_0970 | Sden_0971 | Curli production assembly/transport component CsgF, putative. | Curli production assembly/transport component CsgG. | 0.999 |
Sden_0970 | Sden_2327 | Curli production assembly/transport component CsgF, putative. | Transcriptional regulator, LuxR family. | 0.873 |
Sden_0971 | Sden_0970 | Curli production assembly/transport component CsgG. | Curli production assembly/transport component CsgF, putative. | 0.999 |
Sden_0971 | Sden_2327 | Curli production assembly/transport component CsgG. | Transcriptional regulator, LuxR family. | 0.858 |
Sden_1191 | Sden_1683 | Hpt sensor hybrid histidine kinase. | CHASE. | 0.991 |
Sden_1191 | Sden_1918 | Hpt sensor hybrid histidine kinase. | PAS/PAC sensor hybrid histidine kinase. | 0.989 |
Sden_1191 | Sden_2327 | Hpt sensor hybrid histidine kinase. | Transcriptional regulator, LuxR family. | 0.906 |
Sden_1191 | Sden_2342 | Hpt sensor hybrid histidine kinase. | ATP-binding region, ATPase-like protein. | 0.999 |
Sden_1191 | Sden_3153 | Hpt sensor hybrid histidine kinase. | Hypothetical protein. | 0.985 |
Sden_1191 | Sden_3722 | Hpt sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.996 |
Sden_1683 | Sden_1191 | CHASE. | Hpt sensor hybrid histidine kinase. | 0.991 |
Sden_1683 | Sden_1918 | CHASE. | PAS/PAC sensor hybrid histidine kinase. | 0.990 |
Sden_1683 | Sden_2327 | CHASE. | Transcriptional regulator, LuxR family. | 0.858 |
Sden_1683 | Sden_2342 | CHASE. | ATP-binding region, ATPase-like protein. | 0.995 |
Sden_1683 | Sden_3054 | CHASE. | Histidine kinase, dimerisation and phosphoacceptor region. | 0.551 |
Sden_1683 | Sden_3153 | CHASE. | Hypothetical protein. | 0.986 |
Sden_1683 | Sden_3474 | CHASE. | Histidine kinase, dimerisation and phosphoacceptor region. | 0.551 |
Sden_1683 | Sden_3722 | CHASE. | Multi-sensor hybrid histidine kinase. | 0.996 |
Sden_1918 | Sden_1191 | PAS/PAC sensor hybrid histidine kinase. | Hpt sensor hybrid histidine kinase. | 0.989 |
Sden_1918 | Sden_1683 | PAS/PAC sensor hybrid histidine kinase. | CHASE. | 0.990 |
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