Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sden_2467Conserved hypothetical protein. (624 aa)    
Predicted Functional Partners:
Sden_2472
Conserved hypothetical protein.
 
     0.821
rlmL
Putative RNA methylase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
  
    0.789
Sden_3194
Conserved hypothetical protein.
  
     0.773
Sden_2694
Conserved hypothetical protein.
  
     0.769
Sden_2555
TPR repeat.
  
     0.768
Sden_2821
General secretion pathway protein B.
  
     0.765
Sden_2468
ABC transporter related.
       0.764
Sden_2469
Glutaredoxin 2.
       0.764
Sden_3283
Conserved hypothetical protein.
  
     0.759
Sden_1644
Conserved hypothetical protein.
  
     0.755
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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