STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_2713Type IV pilus biogenesis protein, putative. (172 aa)    
Predicted Functional Partners:
Sden_2715
Methylation.
 
  
 0.866
Sden_2719
Methylation.
 
  
 0.819
Sden_2718
Type IV pilus assembly protein PilW.
 
  
 0.818
Sden_2716
Type IV pilin biogenesis protein, putative.
 
  
 0.785
Sden_0259
Pilus assembly protein, PilQ.
  
  
 0.779
Sden_0257
Fimbrial assembly.
 
  
 0.751
Sden_0258
Pilus assembly protein, PilO.
 
   
 0.717
Sden_2350
Transglutaminase-like protein.
 
     0.709
Sden_2349
Protein of unknown function DUF58.
  
     0.696
Sden_0256
Type IV pilus assembly protein PilM.
 
   
 0.638
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.