STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_2816Conserved hypothetical protein. (263 aa)    
Predicted Functional Partners:
erpA
HesB/YadR/YfhF; Required for insertion of 4Fe-4S clusters for at least IspG.
  
    0.804
Sden_2817
Cl- channel, voltage gated.
       0.591
Sden_1642
Conserved hypothetical protein.
  
     0.578
Sden_1644
Conserved hypothetical protein.
  
     0.577
lptC
Protein of unknown function DUF1239; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
     0.564
Sden_1543
Conserved hypothetical protein.
  
     0.541
Sden_0091
Conserved hypothetical protein.
  
     0.504
Sden_0362
Peptidase M23B.
  
     0.502
Sden_0392
Protein of unknown function DUF484.
  
     0.462
Sden_1792
Conserved hypothetical protein.
  
     0.461
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.