STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_2846ATP-binding region, ATPase-like protein. (452 aa)    
Predicted Functional Partners:
Sden_2847
Two component, sigma54 specific, transcriptional regulator, Fis family.
 
 
 0.907
Sden_2852
Secretion protein HlyD.
 
     0.869
Sden_2849
Protein of unknown function DUF214.
 
     0.834
Sden_1341
GTP-binding signal recognition particle SRP54, G-domain.
   
  
 0.823
Sden_1699
ATP-binding region, ATPase-like protein.
 
 
 
0.785
Sden_2848
Protein of unknown function DUF214.
 
     0.767
fliE-3
Flagellar hook-basal body complex protein (FliE).
 
   0.730
Sden_2850
ABC transporter related.
 
     0.715
Sden_0053
Secretory protein YscJ/FliF.
  
    0.702
Sden_1324
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
    0.702
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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