Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sden_0409 | Sden_1839 | Putative Zn-dependent aminopeptidase. | Peptidase M28. | 0.562 |
Sden_0409 | Sden_2401 | Putative Zn-dependent aminopeptidase. | Peptidase M28. | 0.578 |
Sden_0409 | Sden_2931 | Putative Zn-dependent aminopeptidase. | TonB-dependent receptor. | 0.506 |
Sden_0905 | Sden_2029 | TonB-like protein. | TonB-dependent receptor. | 0.538 |
Sden_0905 | Sden_2610 | TonB-like protein. | TonB-dependent receptor. | 0.941 |
Sden_0905 | Sden_2931 | TonB-like protein. | TonB-dependent receptor. | 0.530 |
Sden_1839 | Sden_0409 | Peptidase M28. | Putative Zn-dependent aminopeptidase. | 0.562 |
Sden_1839 | Sden_2931 | Peptidase M28. | TonB-dependent receptor. | 0.486 |
Sden_2029 | Sden_0905 | TonB-dependent receptor. | TonB-like protein. | 0.538 |
Sden_2029 | Sden_2030 | TonB-dependent receptor. | Tryptophan halogenase. | 0.911 |
Sden_2029 | Sden_2421 | TonB-dependent receptor. | TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.548 |
Sden_2029 | Sden_2931 | TonB-dependent receptor. | TonB-dependent receptor. | 0.564 |
Sden_2029 | Sden_3534 | TonB-dependent receptor. | Amino acid adenylation. | 0.806 |
Sden_2030 | Sden_2029 | Tryptophan halogenase. | TonB-dependent receptor. | 0.911 |
Sden_2030 | Sden_2610 | Tryptophan halogenase. | TonB-dependent receptor. | 0.773 |
Sden_2030 | Sden_2931 | Tryptophan halogenase. | TonB-dependent receptor. | 0.548 |
Sden_2401 | Sden_0409 | Peptidase M28. | Putative Zn-dependent aminopeptidase. | 0.578 |
Sden_2401 | Sden_2931 | Peptidase M28. | TonB-dependent receptor. | 0.493 |
Sden_2421 | Sden_2029 | TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | TonB-dependent receptor. | 0.548 |
Sden_2421 | Sden_2610 | TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | TonB-dependent receptor. | 0.944 |
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