Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sden_0532 | Sden_0538 | Diguanylate cyclase. | Multi-sensor hybrid histidine kinase. | 0.829 |
Sden_0532 | Sden_0664 | Diguanylate cyclase. | ATP-binding region, ATPase-like protein. | 0.745 |
Sden_0532 | Sden_1191 | Diguanylate cyclase. | Hpt sensor hybrid histidine kinase. | 0.923 |
Sden_0532 | Sden_1683 | Diguanylate cyclase. | CHASE. | 0.921 |
Sden_0532 | Sden_1684 | Diguanylate cyclase. | Response regulator receiver modulated diguanylate cyclase. | 0.485 |
Sden_0532 | Sden_1996 | Diguanylate cyclase. | GGDEF domain. | 0.940 |
Sden_0532 | Sden_2342 | Diguanylate cyclase. | ATP-binding region, ATPase-like protein. | 0.955 |
Sden_0532 | Sden_2959 | Diguanylate cyclase. | GGDEF domain. | 0.412 |
Sden_0532 | Sden_2961 | Diguanylate cyclase. | GGDEF domain protein. | 0.731 |
Sden_0532 | Sden_3722 | Diguanylate cyclase. | Multi-sensor hybrid histidine kinase. | 0.915 |
Sden_0538 | Sden_0532 | Multi-sensor hybrid histidine kinase. | Diguanylate cyclase. | 0.829 |
Sden_0538 | Sden_0664 | Multi-sensor hybrid histidine kinase. | ATP-binding region, ATPase-like protein. | 0.973 |
Sden_0538 | Sden_1191 | Multi-sensor hybrid histidine kinase. | Hpt sensor hybrid histidine kinase. | 0.990 |
Sden_0538 | Sden_1683 | Multi-sensor hybrid histidine kinase. | CHASE. | 0.990 |
Sden_0538 | Sden_1684 | Multi-sensor hybrid histidine kinase. | Response regulator receiver modulated diguanylate cyclase. | 0.899 |
Sden_0538 | Sden_1996 | Multi-sensor hybrid histidine kinase. | GGDEF domain. | 0.987 |
Sden_0538 | Sden_2342 | Multi-sensor hybrid histidine kinase. | ATP-binding region, ATPase-like protein. | 0.991 |
Sden_0538 | Sden_2959 | Multi-sensor hybrid histidine kinase. | GGDEF domain. | 0.486 |
Sden_0538 | Sden_2961 | Multi-sensor hybrid histidine kinase. | GGDEF domain protein. | 0.614 |
Sden_0538 | Sden_3722 | Multi-sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.991 |
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