Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sden_0776 | Sden_3052 | Sterol desaturase family protein. | Carotenoid oxygenase. | 0.420 |
Sden_0776 | Sden_3532 | Sterol desaturase family protein. | Amino acid adenylation. | 0.481 |
Sden_1075 | Sden_1177 | Phospholipase D/Transphosphatidylase. | Amino acid adenylation. | 0.506 |
Sden_1075 | Sden_3052 | Phospholipase D/Transphosphatidylase. | Carotenoid oxygenase. | 0.453 |
Sden_1075 | Sden_3532 | Phospholipase D/Transphosphatidylase. | Amino acid adenylation. | 0.731 |
Sden_1075 | Sden_3733 | Phospholipase D/Transphosphatidylase. | Amino acid adenylation. | 0.454 |
Sden_1177 | Sden_1075 | Amino acid adenylation. | Phospholipase D/Transphosphatidylase. | 0.506 |
Sden_1177 | Sden_3052 | Amino acid adenylation. | Carotenoid oxygenase. | 0.535 |
Sden_1177 | Sden_3532 | Amino acid adenylation. | Amino acid adenylation. | 0.999 |
Sden_1177 | Sden_3733 | Amino acid adenylation. | Amino acid adenylation. | 0.999 |
Sden_3051 | Sden_3052 | Hypothetical protein. | Carotenoid oxygenase. | 0.477 |
Sden_3051 | Sden_3053 | Hypothetical protein. | Conserved hypothetical protein. | 0.439 |
Sden_3052 | Sden_0776 | Carotenoid oxygenase. | Sterol desaturase family protein. | 0.420 |
Sden_3052 | Sden_1075 | Carotenoid oxygenase. | Phospholipase D/Transphosphatidylase. | 0.453 |
Sden_3052 | Sden_1177 | Carotenoid oxygenase. | Amino acid adenylation. | 0.535 |
Sden_3052 | Sden_3051 | Carotenoid oxygenase. | Hypothetical protein. | 0.477 |
Sden_3052 | Sden_3053 | Carotenoid oxygenase. | Conserved hypothetical protein. | 0.814 |
Sden_3052 | Sden_3054 | Carotenoid oxygenase. | Histidine kinase, dimerisation and phosphoacceptor region. | 0.464 |
Sden_3052 | Sden_3532 | Carotenoid oxygenase. | Amino acid adenylation. | 0.560 |
Sden_3052 | Sden_3733 | Carotenoid oxygenase. | Amino acid adenylation. | 0.425 |
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