Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sden_0538 | Sden_1191 | Multi-sensor hybrid histidine kinase. | Hpt sensor hybrid histidine kinase. | 0.990 |
Sden_0538 | Sden_1683 | Multi-sensor hybrid histidine kinase. | CHASE. | 0.990 |
Sden_0538 | Sden_1996 | Multi-sensor hybrid histidine kinase. | GGDEF domain. | 0.987 |
Sden_0538 | Sden_2049 | Multi-sensor hybrid histidine kinase. | Type IV pilus assembly PilZ. | 0.672 |
Sden_0538 | Sden_2120 | Multi-sensor hybrid histidine kinase. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). | 0.931 |
Sden_0538 | Sden_2342 | Multi-sensor hybrid histidine kinase. | ATP-binding region, ATPase-like protein. | 0.991 |
Sden_0538 | Sden_3166 | Multi-sensor hybrid histidine kinase. | Diguanylate cyclase/phosphodiesterase. | 0.827 |
Sden_0538 | Sden_3670 | Multi-sensor hybrid histidine kinase. | GGDEF domain. | 0.982 |
Sden_0538 | Sden_3722 | Multi-sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.991 |
Sden_1191 | Sden_0538 | Hpt sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.990 |
Sden_1191 | Sden_1244 | Hpt sensor hybrid histidine kinase. | Diguanylate cyclase. | 0.600 |
Sden_1191 | Sden_1683 | Hpt sensor hybrid histidine kinase. | CHASE. | 0.991 |
Sden_1191 | Sden_1996 | Hpt sensor hybrid histidine kinase. | GGDEF domain. | 0.988 |
Sden_1191 | Sden_2120 | Hpt sensor hybrid histidine kinase. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). | 0.957 |
Sden_1191 | Sden_2342 | Hpt sensor hybrid histidine kinase. | ATP-binding region, ATPase-like protein. | 0.999 |
Sden_1191 | Sden_3166 | Hpt sensor hybrid histidine kinase. | Diguanylate cyclase/phosphodiesterase. | 0.914 |
Sden_1191 | Sden_3670 | Hpt sensor hybrid histidine kinase. | GGDEF domain. | 0.985 |
Sden_1191 | Sden_3722 | Hpt sensor hybrid histidine kinase. | Multi-sensor hybrid histidine kinase. | 0.996 |
Sden_1244 | Sden_1191 | Diguanylate cyclase. | Hpt sensor hybrid histidine kinase. | 0.600 |
Sden_1244 | Sden_1683 | Diguanylate cyclase. | CHASE. | 0.573 |
page 1 of 5