STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_3253Phage DNA packaging Nu1. (176 aa)    
Predicted Functional Partners:
Sden_3254
Hypothetical protein.
       0.773
Sden_3256
Glycoside hydrolase, family 24.
       0.771
Sden_3255
Hypothetical protein.
       0.746
Sden_3257
Hypothetical protein.
       0.746
Sden_3252
Phage terminase GpA.
  
    0.702
Sden_3251
Conserved hypothetical protein.
       0.599
Sden_3250
Phage portal protein, lambda.
  
    0.507
Sden_3249
ATP-dependent Clp protease proteolytic subunit ClpP; Belongs to the peptidase S14 family.
  
    0.447
Sden_3243
Phage tail tape measure protein TP901, core region.
     
 0.424
Sden_3248
Gifsy-2 prophage; putative RecA/RadA recombinase.
  
    0.400
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.