STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_3283Conserved hypothetical protein. (121 aa)    
Predicted Functional Partners:
Sden_2467
Conserved hypothetical protein.
  
     0.759
Sden_2555
TPR repeat.
  
     0.755
Sden_3282
Conserved hypothetical protein.
 
     0.748
Sden_0094
Peptidase M6, immune inhibitor A.
  
    0.746
Sden_0091
Conserved hypothetical protein.
  
     0.732
Sden_2503
TonB-dependent haem/haemoglobin receptor.
  
     0.732
Sden_3194
Conserved hypothetical protein.
  
     0.732
Sden_0661
Conserved hypothetical protein.
  
     0.706
Sden_0866
GCN5-related N-acetyltransferase.
  
     0.702
Sden_0757
Lipoprotein, putative.
  
     0.696
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.