STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sden_3513Aromatic amino acid transport protein. (417 aa)    
Predicted Functional Partners:
plsB
Glycerol-3-phosphate acyltransferase; Belongs to the GPAT/DAPAT family.
       0.795
Sden_2743
Trp operon repressor.
 
   
 0.722
kdkA
Lipopolysaccharide kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.655
Sden_2377
Protein of unknown function DUF991.
  
     0.638
Sden_1946
L-serine ammonia-lyase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
  
 0.623
Sden_2222
Protein of unknown function DUF1097.
  
     0.581
Sden_1651
Conserved hypothetical protein; Belongs to the UPF0267 family.
  
     0.544
Sden_3512
Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.520
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
  
     0.492
Sden_2696
Protein of unknown function DUF469.
  
     0.482
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.