Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Sden_3545Copper resistance B precursor. (237 aa)    
Predicted Functional Partners:
Sden_3546
Copper-resistance protein CopA.
 
  
 0.995
Sden_3547
Protein of unknown function DUF411.
 
   
 0.887
Sden_3482
Nitrite reductase, copper containing; Belongs to the multicopper oxidase family.
  
  
 0.874
Sden_3544
Copper resistance protein CopC.
     
 0.720
Sden_3542
Putative orphan protein.
 
   
 0.704
Sden_3543
Copper resistance D.
     
 0.624
Sden_3691
Heavy metal translocating P-type ATPase.
     
 0.620
Sden_3690
Transcriptional regulator, MerR family.
 
  
 0.596
Sden_3548
Hypothetical protein.
       0.476
Sden_0576
Heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.418
Your Current Organism:
Shewanella denitrificans
NCBI taxonomy Id: 318161
Other names: S. denitrificans OS217, Shewanella denitrificans OS217, Shewanella denitrificans str. OS217, Shewanella denitrificans strain OS217
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