STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0113General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (401 aa)    
Predicted Functional Partners:
Sfri_0114
General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.996
Sfri_0106
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.978
Sfri_0109
TIGRFAM: general secretion pathway protein H; Prepilin-type cleavage/methylation-like; KEGG: son:SO0170 general secretion pathway protein H.
 
  
 0.959
Sfri_0115
PFAM: type II secretion system protein N; KEGG: son:SO0176 general secretion pathway protein N.
 
   
 0.953
Sfri_0111
TIGRFAM: general secretion pathway protein J; PFAM: methylation site containing protein; KEGG: son:SO0172 general secretion pathway protein J.
 
   
 0.945
Sfri_0112
PFAM: General secretion pathway protein K; KEGG: son:SO0173 general secretion pathway protein K.
 
  
 0.945
Sfri_0110
TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; methylation site containing protein; KEGG: son:SO0171 general secretion pathway protein I.
 
  
 0.944
Sfri_0104
TIGRFAM: general secretion pathway protein C; KEGG: son:SO0165 general secretion pathway protein C.
 
   
 0.935
Sfri_3753
KEGG: son:SO4114 MSHA biogenesis protein MshJ.
 
 
 0.928
Sfri_0108
TIGRFAM: general secretion pathway protein G; PFAM: methylation site containing protein; Bacterial type II secretion system protein G; KEGG: son:SO0169 general secretion pathway protein G.
 
  
 0.920
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.