STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0230Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (908 aa)    
Predicted Functional Partners:
Sfri_2348
KEGG: son:SO1926 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
 
 0.981
Sfri_2779
PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: son:SO1538 isocitrate dehydrogenase, NAD-dependent.
 
 0.946
Sfri_1858
KEGG: cps:CPS_2821 putative 2-methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; Belongs to the citrate synthase family.
 
 0.942
Sfri_2257
KEGG: son:SO2629 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; Belongs to the monomeric-type IDH family.
  
 
 0.919
Sfri_3771
Aconitase; PFAM: aconitate hydratase domain protein; aconitate hydratase 2; KEGG: son:SO0432 aconitate hydratase 2; Belongs to the aconitase/IPM isomerase family.
    
 0.917
Sfri_1102
TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: son:SO1484 isocitrate lyase.
   
 
 0.912
Sfri_3139
PFAM: isocitrate lyase and phosphorylmutase; KEGG: bur:Bcep18194_B0610 isocitrate lyase.
   
 
 0.912
Sfri_1747
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.897
rpmB
PFAM: ribosomal protein L28; KEGG: son:SO4247 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.862
rplS
LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.859
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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