STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0271KEGG: cps:CPS_0734 hypothetical protein. (252 aa)    
Predicted Functional Partners:
Sfri_0270
KEGG: cps:CPS_0735 hypothetical protein.
    
0.896
Sfri_2302
Putative phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; KEGG: cps:CPS_0333 hypothetical protein.
  
     0.651
Sfri_3171
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa2947 TonB-dependent receptor.
 
   
 0.615
Sfri_0397
KEGG: son:SO0321 hypothetical protein.
  
    0.600
Sfri_0451
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: cps:CPS_3966 kelch motif domain protein.
  
     0.584
Sfri_0488
KEGG: cps:CPS_4285 acetyltransferase, GNAT family.
  
     0.567
Sfri_2471
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: xcv:XCV2894 TonB-dependent outer membrane receptor.
 
     0.521
Sfri_1971
PFAM: copper resistance protein CopC; KEGG: pha:PSHAb0009 putative copper resistance (CopC-like).
  
    0.507
Sfri_0009
PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: son:SO0017 hypothetical amidohydrolase.
  
     0.481
Sfri_2416
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2427 TonB-dependent receptor, putative.
 
     0.473
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.