STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0302Carboxypeptidase Ss1. Metallo peptidase. MEROPS family M20D; KEGG: ilo:IL0586 metal-dependent hydrolase of the aminoacylase-2/carboxypeptidase-Z family; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein. (437 aa)    
Predicted Functional Partners:
dapD
KEGG: son:SO1625 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein; Belongs to the transferase hexapeptide repeat family.
 
  
 0.567
Sfri_0303
PFAM: peptidase M16 domain protein; KEGG: son:SO4537.2 hypothetical Zn-dependent peptidase.
       0.545
Sfri_0304
PFAM: peptidase M16 domain protein; KEGG: ppr:PBPRB1337 hypothetical protein.
       0.545
Sfri_0301
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4550 methyltransferase domain protein.
       0.510
Sfri_0299
PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein.
       0.421
Sfri_0300
KEGG: son:SO4551 hypothetical protein.
       0.421
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.