Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sfri_0042 | Sfri_0478 | Sfri_0042 | Sfri_0478 | KEGG: son:SO4730 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | KEGG: son:SO4196 hypothetical protein. | 0.499 |
Sfri_0042 | hemF | Sfri_0042 | Sfri_0030 | KEGG: son:SO4730 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | 0.940 |
Sfri_0463 | Sfri_0478 | Sfri_0463 | Sfri_0478 | KEGG: son:SO0409 hypothetical protein. | KEGG: son:SO4196 hypothetical protein. | 0.431 |
Sfri_0463 | Sfri_3603 | Sfri_0463 | Sfri_3603 | KEGG: son:SO0409 hypothetical protein. | PFAM: porin, Gram-negative type; KEGG: son:SO1821 outer membrane porin, putative. | 0.416 |
Sfri_0478 | Sfri_0042 | Sfri_0478 | Sfri_0042 | KEGG: son:SO4196 hypothetical protein. | KEGG: son:SO4730 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.499 |
Sfri_0478 | Sfri_0463 | Sfri_0478 | Sfri_0463 | KEGG: son:SO4196 hypothetical protein. | KEGG: son:SO0409 hypothetical protein. | 0.431 |
Sfri_0478 | Sfri_3603 | Sfri_0478 | Sfri_3603 | KEGG: son:SO4196 hypothetical protein. | PFAM: porin, Gram-negative type; KEGG: son:SO1821 outer membrane porin, putative. | 0.459 |
Sfri_0478 | hemF | Sfri_0478 | Sfri_0030 | KEGG: son:SO4196 hypothetical protein. | Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | 0.499 |
Sfri_3603 | Sfri_0463 | Sfri_3603 | Sfri_0463 | PFAM: porin, Gram-negative type; KEGG: son:SO1821 outer membrane porin, putative. | KEGG: son:SO0409 hypothetical protein. | 0.416 |
Sfri_3603 | Sfri_0478 | Sfri_3603 | Sfri_0478 | PFAM: porin, Gram-negative type; KEGG: son:SO1821 outer membrane porin, putative. | KEGG: son:SO4196 hypothetical protein. | 0.459 |
hemF | Sfri_0042 | Sfri_0030 | Sfri_0042 | Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | KEGG: son:SO4730 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.940 |
hemF | Sfri_0478 | Sfri_0030 | Sfri_0478 | Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | KEGG: son:SO4196 hypothetical protein. | 0.499 |