STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0487KEGG: sde:Sde_3701 hypothetical protein. (233 aa)    
Predicted Functional Partners:
Sfri_2692
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO3106 cold-active serine alkaline protease.
  
 
 0.844
Sfri_0486
KEGG: cps:CPS_0652 hypothetical protein.
 
    
0.832
Sfri_0484
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_0650 sensor histidine kinase.
 
 
   0.802
Sfri_3594
KEGG: pha:PSHAa1486 hypothetical protein.
  
     0.662
Sfri_0485
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sde:Sde_3703 response regulator receiver domain protein (CheY-like).
 
     0.567
Sfri_0488
KEGG: cps:CPS_4285 acetyltransferase, GNAT family.
       0.527
Sfri_0489
PFAM: FAD dependent oxidoreductase; KEGG: cps:CPS_1461 putative oxidoreductase.
       0.446
Sfri_1779
KEGG: cps:CPS_0256 hypothetical protein.
  
     0.438
Sfri_1308
KEGG: sde:Sde_1104 hypothetical protein.
  
     0.428
Sfri_1795
DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative.
    
 
 0.426
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.