STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0488KEGG: cps:CPS_4285 acetyltransferase, GNAT family. (185 aa)    
Predicted Functional Partners:
Sfri_0489
PFAM: FAD dependent oxidoreductase; KEGG: cps:CPS_1461 putative oxidoreductase.
 
     0.854
Sfri_3083
KEGG: son:SO3645 hypothetical protein.
  
     0.758
Sfri_1253
KEGG: son:SO1612 hypothetical protein.
  
     0.751
Sfri_2777
KEGG: son:SO1548 hypothetical protein.
  
     0.750
Sfri_3503
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0977 TonB-dependent receptor.
  
     0.717
Sfri_2264
KEGG: son:SO2637 hypothetical protein.
  
     0.688
Sfri_0451
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: cps:CPS_3966 kelch motif domain protein.
  
     0.687
seqA
seqA protein; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
     0.687
Sfri_0469
KEGG: son:SO4205 hypothetical protein.
  
     0.676
Sfri_3171
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa2947 TonB-dependent receptor.
  
     0.621
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.