STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0513PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO3800 serine protease, subtilase family; Belongs to the peptidase S8 family. (1212 aa)    
Predicted Functional Partners:
Sfri_3300
KEGG: son:SO0615 hypothetical protein.
  
     0.704
Sfri_3925
KEGG: son:SO4685 hypothetical protein.
 
 
 0.702
Sfri_2869
KEGG: son:SO3364 hypothetical protein.
  
     0.684
Sfri_1448
KEGG: son:SO2917 hypothetical protein.
  
     0.675
Sfri_3529
KEGG: son:SO0551 hypothetical protein.
  
     0.655
Sfri_2658
KEGG: son:SO1854 hypothetical protein.
  
     0.633
Sfri_2264
KEGG: son:SO2637 hypothetical protein.
  
     0.622
Sfri_3603
PFAM: porin, Gram-negative type; KEGG: son:SO1821 outer membrane porin, putative.
  
    0.621
Sfri_0047
PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: son:SO0130 protease, putative.
 
  
 0.586
Sfri_3287
KEGG: son:SO0881 hypothetical protein.
  
     0.552
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.