STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0565PFAM: protein of unknown function DUF47; KEGG: son:SO3770 conserved hypothetical protein TIGR00153. (226 aa)    
Predicted Functional Partners:
Sfri_0566
PFAM: phosphate transporter; KEGG: son:SO3771 phosphate transporter, putative.
 
  
 0.971
Sfri_3885
PFAM: phosphate transporter; KEGG: tma:TM0917 phosphate permease, putative.
 
  
 0.806
Sfri_0567
PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: son:SO3772 SH3 domain protein.
 
     0.573
Sfri_0564
PFAM: adenylate cyclase; KEGG: son:SO3769 hypothetical protein.
       0.507
rpmB
PFAM: ribosomal protein L28; KEGG: son:SO4247 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
    0.468
mtnC
2,3-diketo-5-methylthio-1-phosphopentane phosphatase; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene). Belongs to the HAD-like hydrolase superfamily. MasA/MtnC family.
   
    0.456
Sfri_1911
PFAM: CopG domain protein DNA-binding domain protein; KEGG: son:SO2331 hypothetical protein.
   
    0.450
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.445
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
    0.436
asnS
TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: son:SO2218 asparaginyl-tRNA synthetase.
  
    0.422
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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