STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0652PFAM: protein of unknown function DUF481; KEGG: son:SO0934 hypothetical protein. (246 aa)    
Predicted Functional Partners:
Sfri_1526
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2715 TonB-dependent receptor.
  
     0.552
Sfri_1527
KEGG: son:SO2714 hypothetical protein.
  
     0.508
Sfri_0651
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: plu:plu0798 hypothetical protein.
       0.507
Sfri_2621
SMART: Tetratricopeptide domain protein; KEGG: son:SO1829 TPR domain protein.
  
     0.447
Sfri_1731
KEGG: son:SO2583 hypothetical protein.
  
     0.431
Sfri_0948
KEGG: son:SO1102 TonB-dependent receptor C-terminal region domain lipoprotein.
  
     0.427
Sfri_0503
PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative.
  
     0.405
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.