STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0801PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cps:CPS_1348 putative Xaa-Pro dipeptidase. (437 aa)    
Predicted Functional Partners:
Sfri_0032
PFAM: amidohydrolase; KEGG: pha:PSHAa1729 enzyme.
  
     0.689
Sfri_0033
PFAM: amidohydrolase; KEGG: cps:CPS_3629 amidohydrolase family protein.
 
     0.649
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.629
Sfri_2302
Putative phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; KEGG: cps:CPS_0333 hypothetical protein.
  
     0.616
Sfri_3859
PFAM: peptidase M20; peptidase M28; KEGG: ilo:IL1071 probable aminopeptidase fused to fibronectin type 3 domain.
  
     0.602
Sfri_3957
PFAM: Amidohydrolase 3; KEGG: cps:CPS_2795 amidohydrolase family protein.
  
     0.558
Sfri_0346
PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO4374 histidine ammonia-lyase, putative.
  
  
 0.549
hutH
KEGG: son:SO0098 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
  
  
 0.549
Sfri_0800
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
       0.528
Sfri_3501
KEGG: son:SO0578 hypothetical protein.
  
     0.493
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.