STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0803PFAM: regulatory protein, MarR; KEGG: pae:PA2849 probable transcriptional regulator. (148 aa)    
Predicted Functional Partners:
Sfri_3597
PFAM: OsmC family protein; KEGG: vvy:VVA1125 predicted redox protein.
  
 0.882
Sfri_0804
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: vpa:VPA1416 putative oxidoreductase.
       0.494
Sfri_2764
PFAM: glutathione peroxidase; KEGG: son:SO1563 glutathione peroxidase; Belongs to the glutathione peroxidase family.
  
  
 0.462
Sfri_2294
PFAM: regulatory protein, MarR; KEGG: son:SO2640 transcriptional regulator, MarR family.
  
   
 0.428
Sfri_0805
PFAM: ThiJ/PfpI domain protein; KEGG: psp:PSPPH_3239 ThiJ/PfpI family protein.
       0.411
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.