STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0809PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_0120 transporter, MFS superfamily. (407 aa)    
Predicted Functional Partners:
Sfri_2896
PFAM: protein of unknown function DUF328; KEGG: son:SO3540 hypothetical protein; Belongs to the UPF0246 family.
  
    0.638
Sfri_0808
KEGG: son:SO3722 hypothetical protein.
       0.588
Sfri_0810
KEGG: cps:CPS_0693 hypothetical protein.
       0.496
Sfri_3203
PFAM: nitroreductase; KEGG: cps:CPS_3676 nitroreductase family protein.
  
     0.422
Sfri_0812
PFAM: protein of unknown function DUF1111; KEGG: cps:CPS_0695 putative lipoprotein.
 
     0.421
Sfri_1779
KEGG: cps:CPS_0256 hypothetical protein.
  
     0.416
Sfri_0811
KEGG: cps:CPS_0694 putative lipoprotein.
       0.415
Sfri_0729
KEGG: son:SO3822 hypothetical protein.
  
     0.412
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.