STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0810KEGG: cps:CPS_0693 hypothetical protein. (467 aa)    
Predicted Functional Partners:
Sfri_0811
KEGG: cps:CPS_0694 putative lipoprotein.
 
    0.910
Sfri_1068
KEGG: cps:CPS_3313 putative lipoprotein.
  
 
 0.744
Sfri_3168
PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0940 major facilitator family transporter.
  
     0.722
Sfri_0812
PFAM: protein of unknown function DUF1111; KEGG: cps:CPS_0695 putative lipoprotein.
 
    0.606
Sfri_3932
ADP-heptose:LPS heptosyltransferase-like protein; KEGG: reu:Reut_A2557 glycosyl transferase, family 9.
  
    0.599
Sfri_3581
KEGG: cps:CPS_3994 putative lipoprotein.
  
     0.588
Sfri_0451
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: cps:CPS_3966 kelch motif domain protein.
  
     0.578
Sfri_4033
PFAM: PepSY-associated TM helix domain protein; KEGG: cps:CPS_4600 hypothetical protein.
 
    0.575
Sfri_0677
PFAM: porin, Gram-negative type; KEGG: cps:CPS_3847 porin.
  
     0.563
Sfri_0914
PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1505 transporter, putative.
  
     0.549
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.