STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0860PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pfo:Pfl_1905 twin-arginine translocation pathway signal. (957 aa)    
Predicted Functional Partners:
Sfri_0859
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bur:Bcep18194_B1542 (2Fe-2S)-binding protein.
 
 
 0.997
Sfri_1414
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: son:SO3049 isoquinoline 1-oxidoreductase, alpha subunit, putative.
 
 0.965
Sfri_0200
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: gox:GOX0586 membrane-bound aldehyde dehydrogenase, small subunit.
 
 0.964
Sfri_0858
PFAM: cytochrome c, class I; KEGG: pae:PA4619 probable C-type cytochrome.
 
  
 0.837
Sfri_1412
PFAM: protein of unknown function DUF182; KEGG: son:SO3051 hypothetical xanthine dehydrogenase accessory factor.
 
  
 0.698
Sfri_1415
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: son:SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative.
  
     0.476
Sfri_1413
KEGG: son:SO3050 hypothetical protein.
 
   
 0.472
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.