STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0899PFAM: protein of unknown function DUF214; KEGG: xcv:XCV3757 ABC transporter permease. (437 aa)    
Predicted Functional Partners:
Sfri_0898
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3692 ABC transporter, ATP-binding protein.
 
 
 0.977
Sfri_0900
PFAM: protein of unknown function DUF214; KEGG: son:SO3690 ABC transporter, permease protein.
 
     0.928
Sfri_0897
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3694 HlyD family secretion protein.
 
  
 0.880
Sfri_1813
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1413 ABC transporter ATPase.
 
 
 0.827
Sfri_0902
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3688 nitrogen regulation protein NtrY, putative.
 
     0.794
Sfri_2381
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1925 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.752
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 
 0.698
Sfri_0556
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0857 ABC transporter, ATP-binding protein.
 
 
 0.681
Sfri_1814
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tbd:Tbd_1414 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.677
Sfri_0844
KEGG: son:SO3842 hypothetical protein.
 
    0.615
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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