STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0927PFAM: RDD domain containing protein; KEGG: son:SO1371 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Sfri_0928
KEGG: son:SO1372 hypothetical protein.
 
     0.737
Sfri_3305
PFAM: cytochrome c1; KEGG: son:SO0610 ubiquinol-cytochrome c reductase cytochrome c1 subunit.
  
     0.680
Sfri_2864
KEGG: son:SO3357 hypothetical protein.
  
     0.668
Sfri_0929
PFAM: protein of unknown function DUF486; KEGG: son:SO1373 hypothetical protein.
       0.665
Sfri_0930
PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1374 acetyltransferase, GNAT family.
       0.660
Sfri_0103
PFAM: RNA-binding S4 domain protein; KEGG: son:SO0164 heat shock protein 15; Belongs to the HSP15 family.
  
    0.625
Sfri_0252
KEGG: son:SO4612 hypothetical protein.
  
     0.574
Sfri_1449
KEGG: son:SO2650 hypothetical protein.
  
   
 0.568
Sfri_3945
PFAM: cytochrome c, class I; KEGG: son:SO4666 cytochrome c.
  
     0.561
Sfri_3307
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
     0.546
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.