STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_0932Hypothetical protein; KEGG: hch:HCH_04001 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (247 aa)    
Predicted Functional Partners:
Sfri_2998
KEGG: hch:HCH_00813 hypothetical protein.
  
     0.663
Sfri_0099
KEGG: hch:HCH_00813 hypothetical protein.
  
     0.616
Sfri_0933
KEGG: son:SO1380 hypothetical protein.
       0.615
Sfri_0881
SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_00910 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.612
Sfri_1423
KEGG: hch:HCH_00813 hypothetical protein.
  
     0.609
Sfri_0627
KEGG: mag:amb0186 ABC-type amino acid transport/signal transduction systems.
  
     0.606
Sfri_1880
KEGG: hch:HCH_01260 hypothetical protein.
  
     0.580
Sfri_0891
PFAM: SEC-C motif domain protein; Aspartyl/Asparaginyl beta-hydroxylase; KEGG: cps:CPS_4429 aspartyl/asparaginyl beta-hydroxylase family protein.
  
     0.547
Sfri_0921
SMART: extracellular solute-binding protein, family 3; KEGG: bba:Bd2855 putative ABC amino acid transporter solute binding protein.
  
     0.514
Sfri_1026
KEGG: son:SO1260 hypothetical amino acid ABC transporter.
  
     0.496
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.