STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1083PFAM: DSBA oxidoreductase; KEGG: ppr:PBPRB0337 hypothetical 2-hydroxychromene-2-carboxylateisomerase family protein. (216 aa)    
Predicted Functional Partners:
Sfri_1754
TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: son:SO2871 arsenate reductase, putative.
   
 
 0.827
Sfri_1766
TIGRFAM: conserved hypothetical protein; PFAM: arsenate reductase and related; KEGG: son:SO2470 hypothetical protein; Belongs to the ArsC family.
   
 
 0.827
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.