STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1104KEGG: son:SO3336 hypothetical protein. (201 aa)    
Predicted Functional Partners:
Sfri_1105
PFAM: protein of unknown function DUF980; KEGG: son:SO3335 hypothetical protein; Belongs to the MtfA family.
       0.627
Sfri_3965
Hypothetical protein; KEGG: ilo:IL2526 predicted hydrolase of the alpha/beta superfamily.
  
     0.535
Sfri_0009
PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: son:SO0017 hypothetical amidohydrolase.
 
     0.462
Sfri_1107
KEGG: son:SO3331 hypothetical protein.
 
     0.435
Sfri_1658
PFAM: putative esterase; KEGG: cps:CPS_4960 putative esterase.
  
     0.432
Sfri_2800
PFAM: thioesterase superfamily protein; KEGG: son:SO1486 cytosolic long-chain acyl-CoA thioester hydrolase family protein.
  
     0.423
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.