STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1208KEGG: son:SO3200 hypothetical protein. (132 aa)    
Predicted Functional Partners:
Sfri_1206
PFAM: CheW domain protein; KEGG: son:SO3203 CheW domain protein.
 
  
 0.911
Sfri_1188
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
     0.785
Sfri_0049
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
     0.764
Sfri_1153
KEGG: son:SO3258 hypothetical protein.
  
     0.757
Sfri_1009
PFAM: type IV pilus assembly PilZ; KEGG: son:SO1225 hypothetical protein.
  
     0.744
Sfri_1449
KEGG: son:SO2650 hypothetical protein.
  
     0.742
Sfri_1151
PFAM: protein of unknown function DUF400; KEGG: son:SO3256 hypothetical protein.
  
     0.732
Sfri_1205
PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3204 ParA family protein.
 
  
 0.730
Sfri_2398
KEGG: son:SO2256 hypothetical protein.
  
    0.728
Sfri_1201
Chemotaxis phosphatase, CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
    0.727
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.