Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1237KEGG: hch:HCH_02594 hypothetical protein. (885 aa)    
Predicted Functional Partners:
Sfri_1235
KEGG: hch:HCH_02596 hypothetical protein.
 
 
   0.927
Sfri_1236
PFAM: protein of unknown function DUF1058; SH3, type 3 domain protein; KEGG: sde:Sde_3549 hypothetical protein.
 
     0.922
Sfri_1229
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_02602 hypothetical protein.
 
  
 0.898
Sfri_1232
KEGG: hch:HCH_02599 hypothetical protein.
 
     0.892
Sfri_1233
KEGG: sde:Sde_3552 lipoprotein, putative.
 
     0.880
Sfri_1238
KEGG: hch:HCH_02593 hypothetical protein.
 
     0.877
Sfri_1239
KEGG: hch:HCH_02592 hypothetical protein.
 
     0.874
Sfri_1223
KEGG: sde:Sde_3560 hypothetical protein.
 
 
 
 0.868
Sfri_1231
KEGG: sde:Sde_3568 helix-turn-helix, AraC type.
 
     0.868
Sfri_1240
TIGRFAM: Twin-arginine translocation pathway signal; KEGG: hch:HCH_02591 hypothetical protein.
 
     0.851
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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