STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1247PFAM: regulatory protein, LysR; KEGG: son:SO1607 transcriptional regulator, LysR family. (318 aa)    
Predicted Functional Partners:
Sfri_0498
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0523 transcriptional regulator, LysR family.
  
     0.700
Sfri_2509
PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0295 transcriptional regulator, LysR family.
  
     0.700
Sfri_1434
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0701 transcriptional regulator, LysR family.
  
     0.689
Sfri_1855
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3460 transcriptional regulator, LysR family.
  
     0.688
Sfri_2868
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3363 transcriptional regulator, LysR family.
  
     0.652
Sfri_0776
PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vvy:VVA0252 transcriptional regulator.
  
     0.651
Sfri_2275
Transcriptional regulator, LysR family protein; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRA1401 hypothetical transcriptional regulator, LysR family.
  
     0.638
Sfri_0209
Transcriptional regulator, LysR family protein; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRB1652 putative transcriptional regulator, LysR family.
  
     0.620
Sfri_0384
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0295 transcriptional regulator, LysR family.
  
     0.618
Sfri_0815
Transcriptional regulator, LysR family protein; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4921 substrate-binding transcriptional regulator, LysR family.
  
     0.616
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.