STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1485PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: son:SO2208 phosphotyrosine protein phosphatase. (161 aa)    
Predicted Functional Partners:
Sfri_1386
PFAM: PHP C-terminal domain protein; KEGG: pha:PSHAa1779 capsular polysaccharide biosynthesis, CapC.
     
 0.906
Sfri_1385
Conserved hypothetical protein; PFAM: lipopolysaccharide biosynthesis; KEGG: pha:PSHAa1780 exopolysaccharide biosynthesis protein.
  
 
 0.613
Sfri_4003
PFAM: Bile acid:sodium symporter; KEGG: cps:CPS_3442 putative arsenical-resistance protein.
  
  
 0.557
Sfri_1382
PFAM: sugar transferase; KEGG: pha:PSHAa1783 UDP-glucose lipid carrier transferase.
  
  
 0.535
engB
Cell division checkpoint GTPase YihA; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
  
    0.489
Sfri_3042
PFAM: band 7 protein; KEGG: son:SO0445 HflC protein, putative.
  
    0.488
Sfri_3308
SPFH domain, Band 7 family protein; HflC and HflK could regulate a protease.
  
    0.488
Sfri_1484
PFAM: ATP dependent DNA ligase; KEGG: son:SO2204 DNA ligase, ATP-dependent.
       0.470
Sfri_0460
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0406 thioredoxin 1; Belongs to the thioredoxin family.
  
 
 0.468
Sfri_0867
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0452 thioredoxin 2; Belongs to the thioredoxin family.
  
 
 0.468
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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