STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1508PFAM: ANTAR domain protein; KEGG: tcx:Tcr_1151 response regulator receiver (CheY-like) and ANTAR domain protein. (225 aa)    
Predicted Functional Partners:
Sfri_1835
KEGG: cps:CPS_3413 putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein.
  
 
 0.918
Sfri_1505
Molybdopterin oxidoreductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
 0.838
Sfri_1506
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: vvy:VVA0956 uroporphyrinogen-III methylase.
  
  
 0.833
Sfri_1507
PFAM: glycosyl transferase, family 3; KEGG: ppr:PBPRB0206 hypothetical protein.
       0.791
Sfri_1511
TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_4950 nitrate permease.
 
  
 0.618
Sfri_1512
PFAM: protein kinase; SMART: tyrosine protein kinase; protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: hch:HCH_05817 serine/threonine protein kinase.
 
  
 0.602
Sfri_1510
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: ppr:PBPRA1427 putative nitrite reductase (NAD(P)H) smallsubunit.
  
  
 0.600
Sfri_1509
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: vvu:VV20390 NAD(P)H-nitrite reductase.
  
  
 0.555
Sfri_2123
SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.546
atpD2
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
    0.435
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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