STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1595PFAM: protein of unknown function DUF748; KEGG: son:SO2796 hypothetical protein. (1128 aa)    
Predicted Functional Partners:
Sfri_4041
Transcriptional regulator, DeoR family; PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: son:SO4742 transcriptional regulator, DeoR family.
   
    0.545
Sfri_1594
PFAM: glutaredoxin; KEGG: son:SO2797 hypothetical protein.
       0.504
Sfri_1279
PFAM: outer membrane chaperone Skp (OmpH); KEGG: son:SO1638 outer membrane protein OmpH; Belongs to the skp family.
 
 
 0.492
Sfri_1164
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: son:SO3247 flagellar hook protein FlgE.
   
 
 0.461
Sfri_0287
KEGG: son:SO4561 hypothetical protein.
  
     0.445
Sfri_0829
PFAM: protein of unknown function DUF1458; KEGG: rso:RS05065 hypothetical protein.
  
    0.434
Sfri_2845
KEGG: son:SO3343 hypothetical protein.
  
     0.430
Sfri_1596
KEGG: aci:ACIAD2379 putative acetyltransferase.
   
   0.425
Sfri_1959
PFAM: protein of unknown function DUF330; KEGG: mca:MCA0364 lipoprotein, putative.
  
     0.425
Sfri_1189
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.423
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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