STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1597KEGG: son:SO2794 hypothetical protein. (233 aa)    
Predicted Functional Partners:
Sfri_1599
PFAM: protein of unknown function DUF1289; KEGG: son:SO2792 hypothetical protein.
 
     0.582
Sfri_1913
PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: son:SO2333 hydrolase, alpha/beta fold family.
      0.576
Sfri_2841
PFAM: lipopolysaccharide biosynthesis; KEGG: son:SO3191 chain length determinant protein.
  
     0.535
Sfri_1598
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2793 glyoxalase family protein.
       0.527
Sfri_3599
KEGG: son:SO1504 hypothetical protein.
  
     0.500
Sfri_0306
KEGG: son:SO3676 hypothetical protein.
  
     0.480
Sfri_1596
KEGG: aci:ACIAD2379 putative acetyltransferase.
       0.478
Sfri_0634
KEGG: son:SO0748 hypothetical protein.
  
     0.418
Sfri_2843
PFAM: polysaccharide export protein; KEGG: son:SO3193 polysaccharide biosynthesis protein.
  
     0.400
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.