STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1683KEGG: hch:HCH_02903 hypothetical protein. (239 aa)    
Predicted Functional Partners:
Sfri_0025
PFAM: Peptidoglycan-binding LysM; KEGG: son:SO0033 LysM domain protein.
  
 
 0.948
Sfri_1675
PFAM: phage terminase GpA; KEGG: ecs:ECs1630 terminase large subunit.
 
  
 0.903
Sfri_1684
TIGRFAM: phage tape measure protein; KEGG: son:SO0680 hypothetical protein.
  
  
 0.874
Sfri_1682
Hypothetical protein.
       0.773
Sfri_1679
KEGG: stm:STM1034 putative RecA/RadA recombinase.
       0.700
Sfri_1681
Hypothetical protein.
       0.689
Sfri_1680
Hypothetical protein.
       0.675
Sfri_1677
TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: stm:STM0911 hypothetical protein.
 
  
 0.630
Sfri_1689
KEGG: son:SO0688 hypothetical protein.
 
     0.501
Sfri_1678
PFAM: peptidase S14, ClpP; KEGG: stm:STM0912 ATP-dependent protease; Belongs to the peptidase S14 family.
       0.493
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.