STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfri_1689KEGG: son:SO0688 hypothetical protein. (590 aa)    
Predicted Functional Partners:
Sfri_1686
KEGG: son:SO0682 hypothetical protein.
 
    0.942
Sfri_1684
TIGRFAM: phage tape measure protein; KEGG: son:SO0680 hypothetical protein.
 
     0.896
Sfri_1687
KEGG: son:SO0683 hypothetical protein.
       0.791
Sfri_1688
Hypothetical protein.
       0.773
Sfri_3316
KEGG: son:SO0595 hypothetical protein.
  
     0.760
Sfri_3156
Glycerophosphoryl diester phosphodiesterase-like protein; KEGG: cpe:CPE1877 probable glycerophosphodiester phosphodiesterase.
  
     0.710
Sfri_1690
KEGG: sdn:Sden_3237 hypothetical protein.
       0.661
Sfri_1665
TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: ppr:PBPRB0776 putative adenylate cyclase CyaB.
  
     0.654
Sfri_1685
Hypothetical protein.
       0.620
Sfri_1103
Putative signal transduction protein; PFAM: GAF domain protein; KEGG: son:SO3337 hypothetical protein.
  
     0.589
Your Current Organism:
Shewanella frigidimarina
NCBI taxonomy Id: 318167
Other names: S. frigidimarina NCIMB 400, Shewanella frigidimarina NCIMB 400, Shewanella frigidimarina str. NCIMB 400, Shewanella frigidimarina strain NCIMB 400
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.