Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sfri_1809 | Sfri_1946 | Sfri_1809 | Sfri_1946 | TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF2515 glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.522 |
Sfri_1809 | Sfri_2854 | Sfri_1809 | Sfri_2854 | TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF2515 glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | KEGG: cps:CPS_4910 hypothetical protein. | 0.457 |
Sfri_1809 | betI | Sfri_1809 | Sfri_1948 | TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF2515 glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | Transcriptional regulator, TetR family protein; Repressor involved in choline regulation of the bet genes. | 0.476 |
Sfri_1809 | msrA-2 | Sfri_1809 | Sfri_1488 | TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF2515 glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.407 |
Sfri_1946 | Sfri_1809 | Sfri_1946 | Sfri_1809 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF2515 glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | 0.522 |
Sfri_1946 | betI | Sfri_1946 | Sfri_1948 | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | Transcriptional regulator, TetR family protein; Repressor involved in choline regulation of the bet genes. | 0.962 |
Sfri_2854 | Sfri_1809 | Sfri_2854 | Sfri_1809 | KEGG: cps:CPS_4910 hypothetical protein. | TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF2515 glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | 0.457 |
betI | Sfri_1809 | Sfri_1948 | Sfri_1809 | Transcriptional regulator, TetR family protein; Repressor involved in choline regulation of the bet genes. | TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF2515 glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | 0.476 |
betI | Sfri_1946 | Sfri_1948 | Sfri_1946 | Transcriptional regulator, TetR family protein; Repressor involved in choline regulation of the bet genes. | Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.962 |
msrA-2 | Sfri_1809 | Sfri_1488 | Sfri_1809 | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF2515 glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. | 0.407 |